Dr. Hartman,
Direct measurement of ammonia is going to be more accurate for ammonia issues than orotic acid, although the orotic acid when high does indicate an ammonia build-up problem – specifically linked to the urea cycle.
What happens is carbamoyl-phosphate (a compound linked to ornithine transcarbamoylase deficieny) is converted to orotic acid. This leads to excess serum ammonia (and likely urine ammonia) and decreased BUN. The hyperammonia can deplete alpha-ketoglutarate leading to Kreb Cycle inhibition and decreased production of ATP.
How urine ammonia correlates to serum ammonia I don’t know specifically, other than individuals with kidney disorders may have a difficult time regulating ammonia.
Have you checked serum ammonia on this individual?
Dr. Woeller
P.S. One thing about amino acid tests in general, from my understanding, is the potential for degradation of the sample leading to inadvertent ammonia build-up.